IL_9PN5_013
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 9PN5|1|A1|A|398, 9PN5|1|A1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.3
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
9PN5|1|A1|G|376
9PN5|1|A1|A|377
9PN5|1|A1|A|378
9PN5|1|A1|C|379
*
9PN5|1|A1|G|390
9PN5|1|A1|A|391
9PN5|1|A1|G|392
9PN5|1|A1|U|393
9PN5|1|A1|G|394
9PN5|1|A1|A|395
9PN5|1|A1|A|396
9PN5|1|A1|A|397
9PN5|1|A1|A|398
9PN5|1|A1|A|399
9PN5|1|A1|G|400
9PN5|1|A1|U|401
9PN5|1|A1|A|402
9PN5|1|A1|C|403
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AP
- 60S ribosomal protein L17-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Al
- 60S ribosomal protein L39
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