IL_9PN5_014
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.3
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9PN5|1|A1|G|404
9PN5|1|A1|U|405
9PN5|1|A1|G|406
9PN5|1|A1|A|407
9PN5|1|A1|A|408
9PN5|1|A1|A|409
9PN5|1|A1|U|410
*
9PN5|1|A4|A|13
9PN5|1|A4|C|14
9PN5|1|A4|G|15
9PN5|1|A4|G|16
9PN5|1|A4|A|17
9PN5|1|A4|U|18
9PN5|1|A4|C|19
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AC
- 60S ribosomal protein L4-A
- Chain AP
- 60S ribosomal protein L17-A
- Chain Ae
- 60S ribosomal protein L32
Coloring options: