IL_9PN5_016
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- CAGACAUGGUGUUUUGUAUUUCACUGG*CAUAAUG
- Length
- 34 nucleotides
- Bulged bases
- 9PN5|1|A1|A|440, 9PN5|1|A1|G|442, 9PN5|1|A1|U|444, 9PN5|1|A1|U|446, 9PN5|1|A1|U|447, 9PN5|1|A1|U|449, 9PN5|1|A1|G|450, 9PN5|1|A1|A|486, 9PN5|1|A1|C|492
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PN5|1|A1|C|435
9PN5|1|A1|A|436
9PN5|1|A1|G|437
9PN5|1|A1|A|438
9PN5|1|A1|C|439
9PN5|1|A1|A|440
9PN5|1|A1|U|441
9PN5|1|A1|G|442
9PN5|1|A1|G|443
9PN5|1|A1|U|444
9PN5|1|A1|G|445
9PN5|1|A1|U|446
9PN5|1|A1|U|447
9PN5|1|A1|U|448
9PN5|1|A1|U|449
9PN5|1|A1|G|450
9PN5|1|A1|U|451
9PN5|1|A1|A|486
9PN5|1|A1|U|487
9PN5|1|A1|U|488
9PN5|1|A1|U|489
9PN5|1|A1|C|490
9PN5|1|A1|A|491
9PN5|1|A1|C|492
9PN5|1|A1|U|493
9PN5|1|A1|G|494
9PN5|1|A1|G|495
*
9PN5|1|A1|C|618
9PN5|1|A1|A|619
9PN5|1|A1|U|620
9PN5|1|A1|A|621
9PN5|1|A1|A|622
9PN5|1|A1|U|623
9PN5|1|A1|G|624
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AE
- Large ribosomal subunit protein eL6A
- Chain AP
- 60S ribosomal protein L17-A
- Chain Ae
- 60S ribosomal protein L32
- Chain Af
- 60S ribosomal protein L33-A
Coloring options: