IL_9PN5_039

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GCGAA(PSU)*AAAC

Length

10 nucleotides

Bulged bases

9PN5|1|A1|G|1001

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16301.3

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

10

Unit IDs

9PN5|1|A1|G|999
9PN5|1|A1|C|1000
9PN5|1|A1|G|1001
9PN5|1|A1|A|1002
9PN5|1|A1|A|1003
9PN5|1|A1|PSU|1004
*
9PN5|1|A1|A|1046
9PN5|1|A1|A|1047
9PN5|1|A1|A|1048
9PN5|1|A1|C|1049

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A3

5S ribosomal RNA; 5S rRNA

Chain AD

60S ribosomal protein L5

Chain AI

Large ribosomal subunit protein uL16

Chain AT

60S ribosomal protein L21-A