IL_9PN5_046

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UUAAG*CUAUA

Length

10 nucleotides

Bulged bases

9PN5|1|A1|U|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08938.3

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9PN5|1|A1|U|1167
9PN5|1|A1|U|1168
9PN5|1|A1|A|1169
9PN5|1|A1|A|1170
9PN5|1|A1|G|1171
*
9PN5|1|A1|C|1328
9PN5|1|A1|U|1329
9PN5|1|A1|A|1330
9PN5|1|A1|U|1331
9PN5|1|A1|A|1332

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A3

5S ribosomal RNA; 5S rRNA

Chain AF

60S ribosomal protein L7-A

Chain AQ

60S ribosomal protein L18-A

Chain Ae

60S ribosomal protein L32

Chain Af

60S ribosomal protein L33-A