IL_9PN5_047

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UGCCGGAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46868.2

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

9PN5|1|A1|U|1173
9PN5|1|A1|G|1174
9PN5|1|A1|C|1175
9PN5|1|A1|C|1176
9PN5|1|A1|G|1177
9PN5|1|A1|G|1178
9PN5|1|A1|A|1179
9PN5|1|A1|A|1180
*
9PN5|1|A1|U|1325
9PN5|1|A1|A|1326

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L7-A

Chain AO

Large ribosomal subunit protein uL13A

Chain AS

Large ribosomal subunit protein eL20A

Chain Af

60S ribosomal protein L33-A