IL_9PN5_051

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9PN5|1|A1|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9PN5|1|A1|G|1207
9PN5|1|A1|U|1208
9PN5|1|A1|G|1209
*
9PN5|1|A1|C|1296
9PN5|1|A1|C|1297

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A3

5S ribosomal RNA; 5S rRNA

Chain AH

Large ribosomal subunit protein uL6A

Chain AS

Large ribosomal subunit protein eL20A

Chain Am

Ubiquitin-ribosomal protein eL40A fusion protein