IL_9PN5_052

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UCUAGACAG*CGAA

Length

13 nucleotides

Bulged bases

9PN5|1|A1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|A1|U|1218
9PN5|1|A1|C|1219
9PN5|1|A1|U|1220
9PN5|1|A1|A|1221
9PN5|1|A1|G|1222
9PN5|1|A1|A|1223
9PN5|1|A1|C|1224
9PN5|1|A1|A|1225
9PN5|1|A1|G|1226
*
9PN5|1|A1|C|1284
9PN5|1|A1|G|1285
9PN5|1|A1|A|1286
9PN5|1|A1|A|1287

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AS

Large ribosomal subunit protein eL20A

Chain Am

Ubiquitin-ribosomal protein eL40A fusion protein