IL_9PN5_065

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AUUCUUC*GGAAUAGUU

Length

16 nucleotides

Bulged bases

9PN5|1|A1|C|1628, 9PN5|1|A1|U|1629, 9PN5|1|A1|U|1815, 9PN5|1|A1|G|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|A1|A|1625
9PN5|1|A1|U|1626
9PN5|1|A1|U|1627
9PN5|1|A1|C|1628
9PN5|1|A1|U|1629
9PN5|1|A1|U|1630
9PN5|1|A1|C|1631
*
9PN5|1|A1|G|1811
9PN5|1|A1|G|1812
9PN5|1|A1|A|1813
9PN5|1|A1|A|1814
9PN5|1|A1|U|1815
9PN5|1|A1|A|1816
9PN5|1|A1|G|1817
9PN5|1|A1|U|1818
9PN5|1|A1|U|1819

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AZ

60S ribosomal protein L27-A