IL_9PN5_085

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.3

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9PN5|1|A1|U|2211
9PN5|1|A1|C|2212
9PN5|1|A1|A|2213
9PN5|1|A1|A|2214
9PN5|1|A1|A|2215
9PN5|1|A1|G|2216
9PN5|1|A1|U|2217
*
9PN5|1|A1|A|2228
9PN5|1|A1|A|2229
9PN5|1|A1|C|2230
9PN5|1|A1|C|2231
9PN5|1|A1|A|2232
9PN5|1|A1|A|2233
9PN5|1|A1|G|2234

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ai

60S ribosomal protein L36-A

Chain Ao

Large ribosomal subunit protein eL42A