IL_9PN5_087
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- C(5MC)AAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 9PN5|1|A1|A|2281, 9PN5|1|A1|C|2287, 9PN5|1|A1|C|2306
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.3
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 9
Unit IDs
9PN5|1|A1|C|2277
9PN5|1|A1|5MC|2278
9PN5|1|A1|A|2279
9PN5|1|A1|A|2280
9PN5|1|A1|A|2281
9PN5|1|A1|U|2282
9PN5|1|A1|G|2283
9PN5|1|A1|C|2284
9PN5|1|A1|C|2285
9PN5|1|A1|U|2286
9PN5|1|A1|C|2287
9PN5|1|A1|G|2288
*
9PN5|1|A1|C|2304
9PN5|1|A1|G|2305
9PN5|1|A1|C|2306
9PN5|1|A1|G|2307
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain An
- Small ribosomal subunit protein eS32A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: