IL_9PN5_103

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

C(PSU)C*G(PSU)GAG

Length

8 nucleotides

Bulged bases

9PN5|1|A1|G|2945, 9PN5|1|A1|A|2946

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

20

Unit IDs

9PN5|1|A1|C|2879
9PN5|1|A1|PSU|2880
9PN5|1|A1|C|2881
*
9PN5|1|A1|G|2943
9PN5|1|A1|PSU|2944
9PN5|1|A1|G|2945
9PN5|1|A1|A|2946
9PN5|1|A1|G|2947

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AV

60S ribosomal protein L23-A