IL_9PN5_110

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

9PN5|1|A1|A|3142, 9PN5|1|A1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

9PN5|1|A1|C|3004
9PN5|1|A1|A|3005
9PN5|1|A1|A|3006
9PN5|1|A1|U|3007
*
9PN5|1|A1|A|3139
9PN5|1|A1|G|3140
9PN5|1|A1|A|3141
9PN5|1|A1|A|3142
9PN5|1|A1|C|3143
9PN5|1|A1|G|3144

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AO

Large ribosomal subunit protein uL13A