IL_9PN5_114

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

9PN5|1|A1|U|3056, 9PN5|1|A1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43276.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

5

Unit IDs

9PN5|1|A1|U|3054
9PN5|1|A1|U|3055
9PN5|1|A1|U|3056
9PN5|1|A1|U|3057
9PN5|1|A1|U|3058
9PN5|1|A1|G|3059
*
9PN5|1|A1|C|3084
9PN5|1|A1|G|3085
9PN5|1|A1|A|3086
9PN5|1|A1|A|3087
9PN5|1|A1|G|3088

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AW

Large ribosomal subunit protein eL24A

Chain Ad

60S ribosomal protein L31-A