IL_9PN5_116

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

9PN5|1|A1|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08938.3

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9PN5|1|A1|A|3103
9PN5|1|A1|U|3104
9PN5|1|A1|U|3105
9PN5|1|A1|A|3106
9PN5|1|A1|U|3107
*
9PN5|1|A1|A|3127
9PN5|1|A1|G|3128
9PN5|1|A1|A|3129
9PN5|1|A1|A|3130
9PN5|1|A1|U|3131

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

Large ribosomal subunit protein uL6A

Chain AO

Large ribosomal subunit protein uL13A

Chain Am

Ubiquitin-ribosomal protein eL40A fusion protein