IL_9PN5_120
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 9PN5|1|A1|A|3180, 9PN5|1|A1|A|3186, 9PN5|1|A1|U|3207, 9PN5|1|A1|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68936.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9PN5|1|A1|U|3179
9PN5|1|A1|A|3180
9PN5|1|A1|C|3181
9PN5|1|A1|G|3182
9PN5|1|A1|A|3183
9PN5|1|A1|A|3184
9PN5|1|A1|U|3185
9PN5|1|A1|A|3186
9PN5|1|A1|A|3187
9PN5|1|A1|G|3188
*
9PN5|1|A1|C|3204
9PN5|1|A1|G|3205
9PN5|1|A1|C|3206
9PN5|1|A1|U|3207
9PN5|1|A1|G|3208
9PN5|1|A1|A|3209
9PN5|1|A1|A|3210
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AE
- Large ribosomal subunit protein eL6A
- Chain AH
- Large ribosomal subunit protein uL6A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AO
- Large ribosomal subunit protein uL13A
- Chain AS
- Large ribosomal subunit protein eL20A
- Chain Af
- 60S ribosomal protein L33-A
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