IL_9PN5_129

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

9PN5|1|A1|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.3

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

9PN5|1|A1|U|3332
9PN5|1|A1|G|3333
9PN5|1|A1|U|3334
9PN5|1|A1|A|3335
9PN5|1|A1|A|3336
9PN5|1|A1|G|3337
*
9PN5|1|A1|C|3367
9PN5|1|A1|U|3368
9PN5|1|A1|G|3369
9PN5|1|A1|A|3370
9PN5|1|A1|G|3371

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AW

Large ribosomal subunit protein eL24A

Chain Ad

60S ribosomal protein L31-A