IL_9PN5_138

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

ACCGAGUAG*CGAAACU

Length

16 nucleotides

Bulged bases

9PN5|1|A3|C|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.5

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9PN5|1|A3|A|72
9PN5|1|A3|C|73
9PN5|1|A3|C|74
9PN5|1|A3|G|75
9PN5|1|A3|A|76
9PN5|1|A3|G|77
9PN5|1|A3|U|78
9PN5|1|A3|A|79
9PN5|1|A3|G|80
*
9PN5|1|A3|C|100
9PN5|1|A3|G|101
9PN5|1|A3|A|102
9PN5|1|A3|A|103
9PN5|1|A3|A|104
9PN5|1|A3|C|105
9PN5|1|A3|U|106

Current chains

Chain A3

5S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AF

60S ribosomal protein L7-A

Chain AI

Large ribosomal subunit protein uL16

Chain AS

Large ribosomal subunit protein eL20A

Chain AT

60S ribosomal protein L21-A