IL_9PN5_139

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AGUG*CAU

Length

7 nucleotides

Bulged bases

9PN5|1|A3|U|86

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9PN5|1|A3|A|84
9PN5|1|A3|G|85
9PN5|1|A3|U|86
9PN5|1|A3|G|87
*
9PN5|1|A3|C|94
9PN5|1|A3|A|95
9PN5|1|A3|U|96

Current chains

Chain A3

5S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AF

60S ribosomal protein L7-A

Chain AI

Large ribosomal subunit protein uL16

Chain AS

Large ribosomal subunit protein eL20A