IL_9PN5_151

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UUA(PSU)UU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.3

Basepair signature

cWW-L-R-L-R-L-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|U|117
9PN5|1|B5|U|118
9PN5|1|B5|A|119
9PN5|1|B5|PSU|120
9PN5|1|B5|U|121
9PN5|1|B5|U|122
*
9PN5|1|B5|A|295
9PN5|1|B5|U|296
9PN5|1|B5|U|297
9PN5|1|B5|C|298
9PN5|1|B5|A|299

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

Small ribosomal subunit protein eS4A

Chain BI

Small ribosomal subunit protein eS8A