IL_9PN5_152

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

9PN5|1|B5|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29461.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

2

Unit IDs

9PN5|1|B5|U|144
9PN5|1|B5|A|145
9PN5|1|B5|U|146
9PN5|1|B5|A|147
9PN5|1|B5|A|148
9PN5|1|B5|C|149
*
9PN5|1|B5|G|165
9PN5|1|B5|C|166
9PN5|1|B5|U|167
9PN5|1|B5|A|168
9PN5|1|B5|A|169
9PN5|1|B5|U|170
9PN5|1|B5|A|171

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

Small ribosomal subunit protein eS6A

Chain BY

Small ribosomal subunit protein eS24A