IL_9PN5_159

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

9PN5|1|B5|U|313, 9PN5|1|B5|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46174.6

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

7

Unit IDs

9PN5|1|B5|U|311
9PN5|1|B5|A|312
9PN5|1|B5|U|313
9PN5|1|B5|C|314
9PN5|1|B5|A|315
9PN5|1|B5|A|316
*
9PN5|1|B5|U|348
9PN5|1|B5|U|349
9PN5|1|B5|U|350
9PN5|1|B5|C|351
9PN5|1|B5|A|352
9PN5|1|B5|A|353
9PN5|1|B5|C|354
9PN5|1|B5|G|355

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

Small ribosomal subunit protein eS8A

Chain BL

Small ribosomal subunit protein uS17A

Chain BX

Small ribosomal subunit protein uS12A