IL_9PN5_160

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.3

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9PN5|1|B5|U|318
9PN5|1|B5|U|319
9PN5|1|B5|U|320
9PN5|1|B5|C|321
9PN5|1|B5|G|322
9PN5|1|B5|A|323
*
9PN5|1|B5|U|345
9PN5|1|B5|G|346

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BI

Small ribosomal subunit protein eS8A

Chain BL

Small ribosomal subunit protein uS17A