IL_9PN5_161

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

9PN5|1|B5|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9PN5|1|B5|G|363
9PN5|1|B5|G|364
9PN5|1|B5|G|365
*
9PN5|1|B5|C|376
9PN5|1|B5|G|377
9PN5|1|B5|A|378
9PN5|1|B5|U|379
9PN5|1|B5|U|380
9PN5|1|B5|C|381

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

Small ribosomal subunit protein eS4A

Chain BJ

Small ribosomal subunit protein uS4A

Chain BX

Small ribosomal subunit protein uS12A