IL_9PN5_168

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02511.3

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

4

Unit IDs

9PN5|1|B5|G|514
9PN5|1|B5|A|515
9PN5|1|B5|G|516
*
9PN5|1|B5|C|536
9PN5|1|B5|G|537
9PN5|1|B5|A|538
9PN5|1|B5|G|539
9PN5|1|B5|G|540
9PN5|1|B5|A|541
9PN5|1|B5|A|542
9PN5|1|B5|C|543

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

Small ribosomal subunit protein uS4A

Chain Be

Small ribosomal subunit protein eS30A