IL_9PN5_173

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9PN5|1|B5|A|579, 9PN5|1|B5|U|581, 9PN5|1|B5|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|G|562
9PN5|1|B5|U|563
9PN5|1|B5|G|564
9PN5|1|B5|C|565
9PN5|1|B5|C|566
9PN5|1|B5|A|567
9PN5|1|B5|G|568
*
9PN5|1|B5|C|575
9PN5|1|B5|G|576
9PN5|1|B5|G|577
9PN5|1|B5|U|578
9PN5|1|B5|A|579
9PN5|1|B5|A|580
9PN5|1|B5|U|581
9PN5|1|B5|U|582
9PN5|1|B5|C|583

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

Small ribosomal subunit protein uS3

Chain BX

Small ribosomal subunit protein uS12A

Chain Be

Small ribosomal subunit protein eS30A