IL_9PN5_174

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9PN5|1|B5|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.3

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|G|616
9PN5|1|B5|U|617
9PN5|1|B5|U|618
9PN5|1|B5|A|619
9PN5|1|B5|A|620
9PN5|1|B5|A|621
9PN5|1|B5|A|622
*
9PN5|1|B5|U|1104
9PN5|1|B5|C|1105

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BX

Small ribosomal subunit protein uS12A

Chain Ba

Small ribosomal subunit protein eS26B