IL_9PN5_176

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9PN5|1|B5|C|627
9PN5|1|B5|G|628
9PN5|1|B5|U|629
9PN5|1|B5|A|630
9PN5|1|B5|G|631
*
9PN5|1|B5|U|968
9PN5|1|B5|C|969
9PN5|1|B5|A|970
9PN5|1|B5|A|971
9PN5|1|B5|G|972

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BL

Small ribosomal subunit protein uS17A

Chain BN

Small ribosomal subunit protein uS15

Chain BW

Small ribosomal subunit protein uS8A

Chain BX

Small ribosomal subunit protein uS12A