IL_9PN5_178

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.4

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

25

Unit IDs

9PN5|1|B5|A|746
9PN5|1|B5|C|747
*
9PN5|1|B5|G|802
9PN5|1|B5|A|803
9PN5|1|B5|A|804
9PN5|1|B5|U|805

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BH

Small ribosomal subunit protein eS7A

Chain BL

Small ribosomal subunit protein uS17A

Chain BW

Small ribosomal subunit protein uS8A

Chain BX

Small ribosomal subunit protein uS12A