IL_9PN5_180
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- GAAAAAAU(PSU)*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 9PN5|1|B5|U|794
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.4
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9PN5|1|B5|G|751
9PN5|1|B5|A|752
9PN5|1|B5|A|753
9PN5|1|B5|A|754
9PN5|1|B5|A|755
9PN5|1|B5|A|756
9PN5|1|B5|A|757
9PN5|1|B5|U|758
9PN5|1|B5|PSU|759
*
9PN5|1|B5|A|791
9PN5|1|B5|U|792
9PN5|1|B5|A|793
9PN5|1|B5|U|794
9PN5|1|B5|U|795
9PN5|1|B5|A|796
9PN5|1|B5|G|797
9PN5|1|B5|C|798
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- Small ribosomal subunit protein eS4A
- Chain BJ
- Small ribosomal subunit protein uS4A
- Chain BL
- Small ribosomal subunit protein uS17A
- Chain BW
- Small ribosomal subunit protein uS8A
Coloring options: