IL_9PN5_186

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9PN5|1|B5|G|885
9PN5|1|B5|U|886
9PN5|1|B5|A|887
9PN5|1|B5|U|888
*
9PN5|1|B5|A|924
9PN5|1|B5|G|925
9PN5|1|B5|A|926
9PN5|1|B5|C|927

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Ap

60S ribosomal protein L43-A

Chain BB

Small ribosomal subunit protein eS1A

Chain BO

Small ribosomal subunit protein uS11A