IL_9PN5_187

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

9PN5|1|B5|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|B5|U|893
9PN5|1|B5|U|894
9PN5|1|B5|G|895
9PN5|1|B5|U|896
9PN5|1|B5|C|897
9PN5|1|B5|A|898
9PN5|1|B5|G|899
*
9PN5|1|B5|C|910
9PN5|1|B5|U|911
9PN5|1|B5|U|912
9PN5|1|B5|G|913
9PN5|1|B5|G|914
9PN5|1|B5|A|915
9PN5|1|B5|U|916
9PN5|1|B5|U|917
9PN5|1|B5|U|918
9PN5|1|B5|A|919

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BB

Small ribosomal subunit protein eS1A

Chain BO

Small ribosomal subunit protein uS11A