IL_9PN5_192

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GGAU*GCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9PN5|1|B5|G|1041
9PN5|1|B5|G|1042
9PN5|1|B5|A|1043
9PN5|1|B5|U|1044
*
9PN5|1|B5|G|1074
9PN5|1|B5|C|1075
9PN5|1|B5|A|1076
9PN5|1|B5|C|1077

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

Small ribosomal subunit protein uS2A

Chain BB

Small ribosomal subunit protein eS1A

Chain BN

Small ribosomal subunit protein uS15

Chain Ba

Small ribosomal subunit protein eS26B