IL_9PN5_194

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|G|1111
9PN5|1|B5|G|1112
9PN5|1|B5|A|1113
9PN5|1|B5|G|1114
9PN5|1|B5|U|1115
9PN5|1|B5|A|1116
9PN5|1|B5|U|1117
9PN5|1|B5|G|1118
*
9PN5|1|B5|U|1129
9PN5|1|B5|G|1130
9PN5|1|B5|A|1131
9PN5|1|B5|A|1132
9PN5|1|B5|A|1133
9PN5|1|B5|C|1134

Current chains

Chain B5

18S rRNA

Nearby chains

Chain An

Small ribosomal subunit protein eS32A

Chain BX

Small ribosomal subunit protein uS12A