IL_9PN5_201

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

9PN5|1|B5|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|B5|A|1224
9PN5|1|B5|U|1225
9PN5|1|B5|A|1226
9PN5|1|B5|A|1227
9PN5|1|B5|G|1228
9PN5|1|B5|G|1229
9PN5|1|B5|A|1230
9PN5|1|B5|U|1231
9PN5|1|B5|U|1232
9PN5|1|B5|G|1233
*
9PN5|1|B5|C|1252
9PN5|1|B5|U|1253
9PN5|1|B5|U|1254
9PN5|1|B5|G|1255
9PN5|1|B5|A|1256
9PN5|1|B5|U|1257
9PN5|1|B5|U|1258
9PN5|1|B5|U|1259

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

Small ribosomal subunit protein eS10A

Chain BM

Small ribosomal subunit protein eS12

Chain Bd

Small ribosomal subunit protein uS14A

Chain Bf

Ubiquitin-ribosomal protein eS31 fusion protein