IL_9PN5_210

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

(PSU)GG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9PN5|1|B5|PSU|1290
9PN5|1|B5|G|1291
9PN5|1|B5|G|1292
*
9PN5|1|B5|C|1323
9PN5|1|B5|G|1324
9PN5|1|B5|A|1325

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

Small ribosomal subunit protein uS2A

Chain BC

Small ribosomal subunit protein uS5

Chain BR

Small ribosomal subunit protein eS17A