IL_9PN5_213

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

9PN5|1|B5|A|1346, 9PN5|1|B5|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.4

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

4

Unit IDs

9PN5|1|B5|A|1345
9PN5|1|B5|A|1346
9PN5|1|B5|U|1347
9PN5|1|B5|A|1348
*
9PN5|1|B5|U|1377
9PN5|1|B5|U|1378
9PN5|1|B5|C|1379
9PN5|1|B5|U|1380

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

Small ribosomal subunit protein uS3

Chain BQ

Small ribosomal subunit protein uS9A

Chain BU

Small ribosomal subunit protein uS10