IL_9PN5_215

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

CUA*UGGAAG

Length

9 nucleotides

Bulged bases

9PN5|1|B5|U|1390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97340.1

Basepair signature

cWW-tWH-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9PN5|1|B5|C|1389
9PN5|1|B5|U|1390
9PN5|1|B5|A|1391
*
9PN5|1|B5|U|1407
9PN5|1|B5|G|1408
9PN5|1|B5|G|1409
9PN5|1|B5|A|1410
9PN5|1|B5|A|1411
9PN5|1|B5|G|1412

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Small ribosomal subunit protein uS7

Chain BQ

Small ribosomal subunit protein uS9A

Chain BR

Small ribosomal subunit protein eS17A

Chain Bg

Small ribosomal subunit protein RACK1