IL_9PN5_228

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GUGAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9PN5|1|B5|G|1668
9PN5|1|B5|U|1669
9PN5|1|B5|G|1670
9PN5|1|B5|A|1671
9PN5|1|B5|G|1672
*
9PN5|1|B5|C|1729
9PN5|1|B5|A|1730
9PN5|1|B5|A|1731
9PN5|1|B5|A|1732
9PN5|1|B5|C|1733

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AV

60S ribosomal protein L23-A

Chain AW

Large ribosomal subunit protein eL24A

Chain BG

Small ribosomal subunit protein eS6A

Chain BI

Small ribosomal subunit protein eS8A