IL_9PN5_232

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

GCUUAGAGAAG*CAUCUCAGAGC

Length

22 nucleotides

Bulged bases

9PN5|1|B5|U|1688, 9PN5|1|B5|A|1689, 9PN5|1|B5|A|1694, 9PN5|1|B5|U|1708, 9PN5|1|B5|U|1710, 9PN5|1|B5|C|1711, 9PN5|1|B5|G|1713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PN5|1|B5|G|1685
9PN5|1|B5|C|1686
9PN5|1|B5|U|1687
9PN5|1|B5|U|1688
9PN5|1|B5|A|1689
9PN5|1|B5|G|1690
9PN5|1|B5|A|1691
9PN5|1|B5|G|1692
9PN5|1|B5|A|1693
9PN5|1|B5|A|1694
9PN5|1|B5|G|1695
*
9PN5|1|B5|C|1706
9PN5|1|B5|A|1707
9PN5|1|B5|U|1708
9PN5|1|B5|C|1709
9PN5|1|B5|U|1710
9PN5|1|B5|C|1711
9PN5|1|B5|A|1712
9PN5|1|B5|G|1713
9PN5|1|B5|A|1714
9PN5|1|B5|G|1715
9PN5|1|B5|C|1716

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

Small ribosomal subunit protein eS6A