IL_9PRD_092

3D structure

PDB id

9PRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CUUGCUCAG*CCCAUG

Length

15 nucleotides

Bulged bases

9PRD|1|AA|U|1246, 9PRD|1|AA|C|1250, 9PRD|1|AA|U|1344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PRD|1|AA|C|1244
9PRD|1|AA|U|1245
9PRD|1|AA|U|1246
9PRD|1|AA|G|1247
9PRD|1|AA|C|1248
9PRD|1|AA|U|1249
9PRD|1|AA|C|1250
9PRD|1|AA|A|1251
9PRD|1|AA|G|1252
*
9PRD|1|AA|C|1340
9PRD|1|AA|C|1341
9PRD|1|AA|C|1342
9PRD|1|AA|A|1343
9PRD|1|AA|U|1344
9PRD|1|AA|G|1345

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial