IL_9PRQ_035

3D structure

PDB id

9PRQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UG*UUAA

Length

6 nucleotides

Bulged bases

9PRQ|1|A|U|2563, 9PRQ|1|A|A|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRQ_035 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.2737

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

9PRQ|1|A|U|2552
9PRQ|1|A|G|2553
*
9PRQ|1|A|U|2562
9PRQ|1|A|U|2563
9PRQ|1|A|A|2564
9PRQ|1|A|A|2565

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial