IL_9PRQ_079
3D structure
- PDB id
- 9PRQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- UUUUA*UGAACA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PRQ_079 not in the Motif Atlas
- Geometric match to IL_4V9F_052
- Geometric discrepancy: 0.4
- The information below is about IL_4V9F_052
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_10133.1
- Basepair signature
- cWW-L-R-tHW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9PRQ|1|AA|U|946
9PRQ|1|AA|U|947
9PRQ|1|AA|U|948
9PRQ|1|AA|U|949
9PRQ|1|AA|A|950
*
9PRQ|1|AA|U|1044
9PRQ|1|AA|G|1045
9PRQ|1|AA|A|1046
9PRQ|1|AA|A|1047
9PRQ|1|AA|C|1048
9PRQ|1|AA|A|1049
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain AL
- 28S ribosomal protein S15, mitochondrial
- Chain AN
- 28S ribosomal protein S17, mitochondrial
- Chain AT
- 28S ribosomal protein S25, mitochondrial
Coloring options: