IL_9PRQ_082

3D structure

PDB id

9PRQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

ACC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRQ_082 not in the Motif Atlas

Geometric match to IL_9AXU_044

Geometric discrepancy: 0.1546

The information below is about IL_9AXU_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9PRQ|1|AA|A|982
9PRQ|1|AA|C|983
9PRQ|1|AA|C|984
*
9PRQ|1|AA|G|1004
9PRQ|1|AA|U|1005
9PRQ|1|AA|U|1006

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AE

28S ribosomal protein S6, mitochondrial

Chain AI

28S ribosomal protein S11, mitochondrial

Chain AQ

Small ribosomal subunit protein bS21m