IL_9PRQ_108
3D structure
- PDB id
- 9PRQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- UC*GCA
- Length
- 5 nucleotides
- Bulged bases
- 9PRQ|1|AA|C|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9PRQ_108 not in the Motif Atlas
- Geometric match to IL_3SN2_002
- Geometric discrepancy: 0.2565
- The information below is about IL_3SN2_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 61
Unit IDs
9PRQ|1|AA|U|1510
9PRQ|1|AA|C|1511
*
9PRQ|1|AA|G|1538
9PRQ|1|AA|C|1539
9PRQ|1|AA|A|1540
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain A0
- Small ribosomal subunit protein mS34
- Chain A3
- Aurora kinase A-interacting protein
- Chain L
- 39S ribosomal protein L14, mitochondrial
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