IL_9PRQ_111

3D structure

PDB id

9PRQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UCU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRQ_111 not in the Motif Atlas

Homologous match to IL_7KJT_001

Geometric discrepancy: 0.2994

The information below is about IL_7KJT_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9PRQ|1|Ah|U|2
9PRQ|1|Ah|C|3
9PRQ|1|Ah|U|4
*
9PRQ|1|Ah|A|70
9PRQ|1|Ah|A|71
9PRQ|1|Ah|A|72

Current chains

Chain Ah

A/T-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain Ag

Elongation factor Tu, mitochondrial