IL_9PRX_051

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UG*(PSU)GA

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRX_051 not in the Motif Atlas

Homologous match to IL_7A0S_088

Geometric discrepancy: 0.226

The information below is about IL_7A0S_088

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_46637.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

21

Unit IDs

9PRX|1|A|U|2994
9PRX|1|A|G|2995
*
9PRX|1|A|PSU|3067
9PRX|1|A|G|3068
9PRX|1|A|A|3069

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Aw

A/A-tRNA

Chain E

39S ribosomal protein L3, mitochondrial