IL_9PRX_091

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUUGCUCAG*CCCAUG

Length

15 nucleotides

Bulged bases

9PRX|1|AA|U|1246, 9PRX|1|AA|C|1250, 9PRX|1|AA|U|1344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PRX|1|AA|C|1244
9PRX|1|AA|U|1245
9PRX|1|AA|U|1246
9PRX|1|AA|G|1247
9PRX|1|AA|C|1248
9PRX|1|AA|U|1249
9PRX|1|AA|C|1250
9PRX|1|AA|A|1251
9PRX|1|AA|G|1252
*
9PRX|1|AA|C|1340
9PRX|1|AA|C|1341
9PRX|1|AA|C|1342
9PRX|1|AA|A|1343
9PRX|1|AA|U|1344
9PRX|1|AA|G|1345

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial