IL_9PRX_106

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

9PRX|1|AA|C|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRX_106 not in the Motif Atlas

Geometric match to IL_3SN2_002

Geometric discrepancy: 0.2028

The information below is about IL_3SN2_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

9PRX|1|AA|U|1510
9PRX|1|AA|C|1511
*
9PRX|1|AA|G|1538
9PRX|1|AA|C|1539
9PRX|1|AA|A|1540

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain A0

Small ribosomal subunit protein mS34

Chain A3

Aurora kinase A-interacting protein

Chain L

39S ribosomal protein L14, mitochondrial