IL_9PRX_110

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AAG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PRX_110 not in the Motif Atlas

Geometric match to IL_8P9A_370

Geometric discrepancy: 0.1282

The information below is about IL_8P9A_370

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9PRX|1|Ax|A|4
9PRX|1|Ax|A|5
9PRX|1|Ax|G|6
*
9PRX|1|Ax|C|62
9PRX|1|Ax|G|63
9PRX|1|Ax|U|64

Current chains

Chain Ax

P/P-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain W

39S ribosomal protein L27, mitochondrial